Publications 


Full length articles

1.     Enany S., Yoshida Y., Magdeldin S., Bo X., Zhang Y., Enany M., Yamamoto T. (2013) Two dimension electrophoresis if the exo-proteome produced from community acquired methicillin resistant Staphylococcus aureus belonging to clonal complex 80. Microb. Res.,  (Epub a head of print).


2.     Zan L., Xu B, Nameta M., Zhang Y., Yoshida Y., Yamamoto K., Magdeldin S., Fujinaka H., Yaoita E., Tasaki M., Nakagawa Y., Saito A., Takahashi K., Yamamoto T. (2012): Profiling of kidney vascular endothelial call plasma membrane proteins by LC-MS/MS. Clin Exp Nephrol, (Epub a head of print).


3.     Yoshida Y., Nameta M., Kuwaano M., Zhang Y., Bo X., Magdeldin S., Cui Z., Fujinaka H., Yaoita E., Tomonaga T., Yamamoto T. (2012): Proteomic approach to human kidney glomerulus prepared by laser microdissection from frozen biopsy specimen: Exploration of proteome after removal of blood- derived proteins. Proteomics clin.appl. (7): 412-417.


4.     Enany S., Yoshida Y., Magdeldin S., Zhang Y., Bo X., Yamamoto T. (2012): Extensive proteomic profiling of the secretome of europian community acquired methicillin resistant Staphylococcus aureus clone. Peptides. 37(1): 128-37.


5.     Magdeldin, S., Huiping L., Yoshida, Y., Satokata I., Maeda Y., Yokoyama M., Enany S., Zhang Y., Xu B., Fujinaka H., Yaoita E., Yamamoto T. (2012) Murine Colon Proteome and Characterization of the Protein Pathways. BioData mining 5:11.


6.     Magdeldin, S., and Yamamoto, T (2012). Toward deciphering Formalin fixed- paraffin embedded (FFPE). Proteomics, Apr;12(7):1045-58.


7.     Zhang Y., Yoshida Y., Xu B., Magdeldin S., Fujinaka H., Liu Z., Miyamoto M., Yaoita E., Yamamoto T. Comparison of human glomerulus proteomic profiles obtained from low quantities of sample by different mass spectrometry with the comprehensive database. (2011), Proteome science 10;9(1):47.


8.     Magdeldin S, Yoshida Y, Zhang Y, Xu B, Yaoita E, Yamamoto T. (2011).“All and None” refining strategy; Fishing your correct protein from Proteomics Ocean. J. Proteomics Bioinform, 4: pp: 123-124. doi:10.4172/jpb.1000178.


9.     Bo Xu, Zhang Y., Yoshida Y., Magdeldin S., Fujinaka F., Ismail T., Yaoita E., Yamamoto T. (2011). Usage of electrostatic eliminator reduces keratin contamination significantly in gel-based proteomics analysis. Journal of proteomics 7 (10) pp: 1022-1029.


10.  Koda R, Zhao L., Yaoita E., Yoshida Y., Tsukita S., Tamura A., Nameta M., Zhang Y., Fujinaka H., Magdeldin S., Xu B., Yamamoto T (2011). Novel expression of Claudin 5 in glomerular podocyte. Cell Tissue Res (343(3):637-4)


11.  Magdeldin, S., Huiping L., Yoshida, Y., Satokata I., Maeda Y., Yokoyama M., Enany S., Zhang Y., Xu B., Fujinaka H., Yaoita E., Yamamoto T. (2010). Differential proteomic shotgun analysis elucidates involvement of water channel aquaporin 8 in presence of alpha amylase in the colon. J Proteome Res (9) pp:6635-6646.


12.  Magdeldin, S. Huiping L., Yoshida Y., Enany S., Zhang Y., Xu B., Fujinaka H., Yaoita E., Yamamoto T., (2010). Comparison of two dimensional electrophoresis mouse colon proteomes before and after knocking out aquaporin 8.  J. Proteomics. 73 (10), pp: 2031-40.


13.  Zhang Y, Yoshida Y, Nameta M, Xu B, Taguchi I, Ikeda T, Fujinaka H, Magdeldin, S. , Tsukaguchi H, Harita Y, Yaoita E, and Tadashi Yamamoto (2010). Glomerular proteins related to slit diaphragm and matrix adhesion in the foot processes are highly tyrosine phosphorylated in the normal rat kidney. Nephrol. Dial. Transplant. 1-11.


14.  Magdeldin, S. Elewa, Ikeda T., Ikeu J., Zhang Y., Xu B., Nameta M., Fujinaka H., Yoshida Y., Yaoita E., and Yamamoto T.: (2009). Dietary supplementation with arachidonic acid but not eicosapentaenoic or docosahexaenoic acids alter lipids metabolism in C57BL/6J mice.General physiology and biophysics, 28 (3), pp: 266-275


15.  Magdeldin, S., Ismail, T.; Islam, S. and Yamamoto, T. (2008): Dehydration- inducible changes on the genetic expression of aquaporin family in C57BL/6J mice. The 6th annual conference of the Egyptian society of Physiological Sciences and their applications (SPSA), pp:35-51.



16.  Magdeldin, S., K. Uchida, T. Hirano, E. G. Grau, A. Abdelfattah, M. Nozaki (2007): Effects of environmental salinity on somatic growth and growth hormone/insulin-like growth factor-I axis in juvenile tilapia, Oreochromis mossambicus. Fisheries Sci. 73, pp: 1023-1032.


17.  Ismail, A.A, El-Nahla, A.M., Siam, A.A., Abuzead S.M., Nozaki, M., Magdeldin, S. (2006): Impacts of salinity changes on gene expression and release of insulin-like growth factor I (IGF-I) in juvenile euryhaline tilapia, Oreochromis mossambicus. SCVMJ, Vol. X (1), pp: 283-293


18.  Abuzead, S.M, Ismail, A.A., Siam, A.A. and Magdeldin, S. (2005): Effects of environmental temperature and photoperiod on reproductive performance in male and female tilapia, Oreochromis niloticus. SCVMJ, Vol. VIII (2), pp: 181-193.


19.  Abuzead, M., Ismail, A.A, Siam, A.A., and Magdeldin, S. (2003): Pheromones modulate reproductive performance in male and female tilapia, Oreochromis niloticus. SCVMJ, Vol VI (2), pp: 65-84.



Abstracts


1.      Proteomics analysis of laser microdissected FFPE glomerular sections from human IgA nephropathy biopsy specimens. Xu B., Shimada S., Zhang Y., Yoshida Y., Liu Z., Magdeldin S., Fujinaka H., Yaoita E., Yamamoto T. 11th world congress HUPO, P326.


2.      Label- free quantification and differential proteomic profiling of human glomerular sclerosis. Zhang Y., Xu B., Yoshida Y., Magdeldin S.,  Liu Z., Yaoita E., Yamamoto T. 11th world congress HUPO, P309


3.      Increased identification of low- abundance, insoluble proteins of glomerulus laser- microdissected from frozen tissue sections exposed to repeated PBS washing. Yoshida Y., Xu B., Zhang Y., Magdeldin S., Yaoita E., Yamamoto T. 11th world congress HUPO, P309


4.      Multi enzyme direct digestion and HPLC- Ms/Ms analysis of formalin fixed- paraffin- embedded tissue laser micro dissected specimens. Magdeldin S., Yoshida Y., Xu B., Zhang., Yaoita E., Yamamoto T. 11th world congress HUPO, P251


5.      Novel approach for deciphering formalin- fixed paraffin- embedded tissue proteome. Magdeldin S., Yoshida Y., Xu B., Zhang., Yaoita E., Yamamoto T. Analytix 2012, Beijing, China


6.      Optimization of protein extraction and LC/MS analysis from formalin fixed- paraffin embedded specimens. Magdeldin S., Yoshida Y., Xu B., Zhang., Yaoita E., Yamamoto T. 55th annual conference of Japanese Society of Nephrology


7.      Characterization and building up a comprehensive murine colon proteome catalogue. Magdeldin S., Li H., Yoshida Y., Enany S., Xu B., Zhang Y., Yaoita E., Yamamoto T. 10th world congress HUPO. P1411


8.      Comparison of on- site proteomics study on laser microdisected FFPE and frozen human glomerulus tissues. Xu B., Shimada S., Zhang Y., Magdeldin S., Yoshida Y., Yamamoto T. 10th world congress HUPO. OC055


9.      Proteomic mapping of kidney endothelial cell surface proteins. Liu Z., Xu B., Zhang Y., Yoshida Y., Magdeldin S., Fujinaka K., Takahashi K., Yamamoto T. (2011). 10th world congress HUPO. P1304


10.   Comparison of human glomerulus proteomic profiles obtained from small samples comparable to biopsy with the comprehensive database. Zhang Y., Yoshida Y., Xu B., Magdeldin S., Fujinaka K., Liu Z., Yaoita E., Yamamoto T. (2011). 10th world congress HUPO. P1126


11.   Human glomerulus proteome: comparison by antibody- based and mass spectrometry- based proteomics. Nameta M., Uhlen M., Yoshida Y.,Xu B., Zhang Y., Magdeldin S., Yaoita E., Yamamoto T. (2011).10th world congress HUPO. P1186


12.   Magdeldin S., Yutaka Y., Yokoyama M., Enany S., Xu B., Zhang Y., Yaoita E., Yamamoto T. (2011). Murine colon proteome and characterization of the protein pathways. 9th JHUPO, P-049


13.   Liu Z., Xu B., Zhang Y., Yoshida Y., Yaoita E., Magdeldin S., Takahashi K., Yamamoto T. (2011). Proteomic mapping of kidney and liver endothelial cell surface proteins. 9th JHUPO, P-051


14.   Xu B., Shimada S., Takamura M., Zhang Y., Azlina E., Magdeldin S., Yoshida Y., Yaoita E., Yamamoto T. (2011). Proteome research of murine liver tissue of NASH model mouse. 9th JHUPO, P-041


15.   Zhang Y., Yoshida Y., Xu B., Magdeldin S., Fujinaka H., Liu Z., Yaoita E., Yamamoto T. (2011). Comparison of human glomerulus proteomic profiles obtained from low quantities of sample by different mass spectrometry with the comprehensive database. 9th JHUPO, P-003


16.    Xu B., Zhang Y., Shimada S., Magdeldin S., Yoshida Y., Yaoita E., Yamamoto T. (2011). Proteomic results of small FFPE rat cortex tissues treated by 3 methods. 9th JHUPO, P-045


17.    Xu B, Shimada S, Zhang Y, Magdeldin S, Fujinaka H, Yoshida Y, Yaoita E, Yamamoto T. On-site proteomics study on laser microdissected rat renal cortex and human glomerulus tissues. 9th HUPO congress (PO189)


18.   Zhang Y, Yoshida Y, Xu B, Magdeldin S, Yaoita E, Yamamoto T. High confidence proteomic profile of minute amount of human kidney glomeruli. 9th HUPO congress (PO197)


19.   Enany S, Magdeldin S, Yoshida Y, Yamamoto T. Exploring resistance determinants of methicillin in staphyslococcus aureus with comparative proteomics approach. 9th HUPO congress (PO129)


20.   Magdeldin S, Yoshida Y, Li H, Enany S, Yokoyama E, Xu B, Fujinaka H, Zhang Z, Yaoita E, Yamamoto T. (2010) Proteomic profiling of aquaporin 8 knockout mice reveals its involvement in alpha amylase regulation. 6th JHUPO, Tokyo, P32


21.   Magdeldin S, Yoshida Y, Li H, Enany S, Yokoyama E, Xu B, Fujinaka H, Zhang Z, Yaoita E, Yamamoto T. (2010). In-depth analysis of aquaporin 8 knockout mice colon using tandem mass spectrometry. 9th HUPO congress (PO035)


22.   Magdeldin, S., Yoshida, Y, Yaoita, E, and Yamamoto, T (2010). Proteomic analysis elucidates involvement of water channel aquaporin 8 in alpha amylase regulation. Japanese Society of Nephrology (JSN), P-242


23.   Shimada S., Zhang Y., Magdeldin  S., Fujinaka H ., Yoshida Y , Yaoita E. ,Yamamoto, T (2009) Efficient methods for avoiding human keratin contamination during gel based proteomics analysis. Clinical Proteomics, 5 (1): 179


24.   Enany S., Yoshida Y, Magdeldin, S., Bo X, Zhang Y., Yaoita E, Yamamoto T. (2009). Proteomic analysis of the European clone Staphylococcus aureus exoproteins. Clinical Proteomics. 5 (1): 236


25.   Magdeldin, S.,Yutaka Yoshida , H li, Yokoyama, Xu Bo, Fujinaka H ,Ying Zhang, Yaoita, E ,Yamamoto, T (2009). T117 Comprehensive Analysis of Wild and AQP 8 Knockout Mouse Colon by Nanoflow LC-MS/MS. Clinical Proteomics . 5 (1): 236


26.   Magdeldin, S. and Yamamoto, T (2008).Branchial Sodium Potassium ATPase enzyme activity of Mitochondrion rich cells In Mozambique tilapia in response to Osmotic changes. EJISST. 062, 5(1).



Book chapters


1.   Affinity chromatography: Principles and Applications, by Sameh Magdeldin and Annette Moser. Chapter 1, pp 1-27 Published in [Affinity chromatography] by InTech. ISBN 978-953-51-0325-7.


2.  Two- Dimensional polyacrylamide gel electrophoresis- A practical perspective by Sameh Magdeldin, Ying Zhang, Bo Xu, Yutaka Yoshida and Tadashi Yamamoto. Chapter 7, pp 91-117. Published in [Gel electrophoresis- Principles and Basics] published by InTech. ISBN 978-953-51-0458-2.